No. words: 1255; after pruning: 1229


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.5 (1,1:469)  463  0.00 0.00 0.21  UCD006R_G07_BG606762LD03P012A05P012A111F1_051.ab1        1   470 (180)  C UCD006F_G07_BG606762LD03P012A05P012A111F1_051.ab1   (136)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C UCD006F_G07_BG606762LD03P012A05P012A111F1_051.ab1   605 
  442    UCD006R_G07_BG606762LD03P012A05P012A111F1_051.ab1   306 
  542  C UCD006F_G07_BG606762LD03P012A05P012A111F1_051.ab1    64 
  550    UCD006R_G07_BG606762LD03P012A05P012A111F1_051.ab1   414 
Contig length: old 785, new 786

Contig length: old 786, new 786
New start: 0