No. words: 1258; after pruning: 1232


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.0 (1,1:475)  464  0.00 0.21 0.21  UCD006R_H07_BG606762LD04P012A05P012A111F1_049.ab1        2   476 (183)  C UCD006F_H07_BG606762LD04P012A05P012A111F1_049.ab1   (124)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C UCD006F_H07_BG606762LD04P012A05P012A111F1_049.ab1   599 
  439    UCD006R_H07_BG606762LD04P012A05P012A111F1_049.ab1   315 
  539  C UCD006F_H07_BG606762LD04P012A05P012A111F1_049.ab1    61 
  547    UCD006R_H07_BG606762LD04P012A05P012A111F1_049.ab1   423 
Contig length: old 782, new 783

Contig length: old 783, new 783
New start: 0