No. words: 1042; after pruning: 990


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.0 (1,1:332)  322  0.61 0.00 0.00  UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1        1   329 (58)  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   (59)   333     5 *
Merge:(0)    0    0.0 3.2 (2,1:-2)  147  0.00 0.00 0.00  UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1      188   335 (57)  C UCD011F_E12_BG606762Sn31P012A05P025F071F1_088.ab1   (0)   148     1 *
Merge:(0)    0    0.0 1.6 (3,1:331)  103  3.48 0.00 0.00  UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1        2   116 (276)    UCD011R_E12_BG606762Sn31P012A05P025F071R1_088.ab1        1   115 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       2        0
 4       1        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  386 nodes

 148 str. conn. components

Path
    1  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   392 
   77    UCD011F_E12_BG606762Sn31P012A05P025F071F1_088.ab1    20 
   84  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   309 
   93    UCD011F_E12_BG606762Sn31P012A05P025F071F1_088.ab1    36 
  101  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   292 
  104    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1    45 
  108  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   285 
  116    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1    57 
  132  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   261 
  153    UCD011F_E12_BG606762Sn31P012A05P025F071F1_088.ab1    96 
  156  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   237 
  160    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   101 
  188  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   205 
  196    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   137 
  208  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   185 
  216    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   157 
  224  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   169 
  264    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   205 
  272  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   121 
  276    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   217 
  280  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   113 
  281    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   222 
  284  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1   109 
  304    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   245 
  308  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1    85 
  362    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   303 
  363  C UCD011R_E12_BG606762Sn31P012A05P025F071R1_088.ab1    29 
  368  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1    25 
  372  C UCD011R_E12_BG606762Sn31P012A05P025F071R1_088.ab1    20 
  376  C UCD021R_C09_BG606762Sn31P012A05P025F071R2_075.ab1    17 
  384  C UCD011R_E12_BG606762Sn31P012A05P025F071R1_088.ab1     8 
  385    UCD021F_C09_BG606762Sn31P012A05P025F071F2_075.ab1   326 
Contig length: old 446, new 446

Contig length: old 446, new 446
New start: 0