No. words: 1155; after pruning: 1116


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.6 (1,1:2)  367  0.80 0.00 0.00  UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1        3   379 (0)    UCD021F_F07_BG606762Ta14P012A05P025F071F2_053.ab1        1   377 (6) *
Merge:(0)    5    0.0 6.3 (2,1:335)  321  0.91 0.00 0.00  UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1        1   331 (48)  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   (57)   336     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 5       1        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  498 nodes

 173 str. conn. components

Path
    1  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   393 
   93    UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1    36 
  109  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   285 
  113    UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1    56 
  125  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   269 
  128    UCD021F_F07_BG606762Ta14P012A05P025F071F2_053.ab1    69 
  132  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   262 
  133    UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1    76 
  145  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   249 
  152    UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1    95 
  165  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   229 
  169    UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1   112 
  224  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1   170 
  225    UCD011F_H10_BG606762Ta14P012A05P025F071F1_066.ab1   168 
  228    UCD021F_F07_BG606762Ta14P012A05P025F071F2_053.ab1   169 
  360  C UCD021R_F07_BG606762Ta14P012A05P025F071R2_053.ab1    34 
  362    UCD021F_F07_BG606762Ta14P012A05P025F071F2_053.ab1   303 
Contig length: old 442, new 442

Contig length: old 442, new 442
New start: 0