No. words: 1293; after pruning: 1267


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.7 (1,1:604)  558  0.16 0.16 0.66  UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1        1   607 (59)  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1   (23)   604     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  292 nodes

 148 str. conn. components

Path
    1  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1   627 
   34    UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1    10 
   50  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1   578 
   60    UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1    37 
  224  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1   404 
  228    UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1   205 
  488  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1   140 
  492    UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1   469 
  504  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1   124 
  512    UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1   489 
  524  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1   104 
  528    UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1   505 
  540  C UCD027R_G04_BG608232Sn25P025A06P036B021R1_020.ab1    88 
  544    UCD027F_G04_BG608232Sn25P025A06P036B021F1_020.ab1   521 
Contig length: old 688, new 689

Contig length: old 689, new 688
New start: 0 
D Change at: 32; seg lengths: entry 0, contig 1