No. words: 1290; after pruning: 1264


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 11.2 (1,1:631)  572  0.16 0.16 0.33  UCD027F_A03_BG608232Ta11P025A06P036B021F1_031.ab1       21   632 (45)  C UCD027R_A03_BG608232Ta11P025A06P036B021R1_031.ab1   (0)   613     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1    UCD027F_A03_BG608232Ta11P025A06P036B021F1_031.ab1     1 
   24  C UCD027R_A03_BG608232Ta11P025A06P036B021R1_031.ab1   610 
   28    UCD027F_A03_BG608232Ta11P025A06P036B021F1_031.ab1    28 
  489  C UCD027R_A03_BG608232Ta11P025A06P036B021R1_031.ab1   144 
  493    UCD027F_A03_BG608232Ta11P025A06P036B021F1_031.ab1   493 
  505  C UCD027R_A03_BG608232Ta11P025A06P036B021R1_031.ab1   128 
  513    UCD027F_A03_BG608232Ta11P025A06P036B021F1_031.ab1   513 
  521  C UCD027R_A03_BG608232Ta11P025A06P036B021R1_031.ab1   112 
  529    UCD027F_A03_BG608232Ta11P025A06P036B021F1_031.ab1   529 
  573  C UCD027R_A03_BG608232Ta11P025A06P036B021R1_031.ab1    60 
  581    UCD027F_A03_BG608232Ta11P025A06P036B021F1_031.ab1   581 
Contig length: old 677, new 677

Contig length: old 677, new 677
New start: 0