No. words: 1060; after pruning: 1034


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:677)  313  0.32 0.00 0.00  UCW047_D11_BE403761Ta22P002D06P022E111R1_089.ab1        1   316 (0)  C UCW048_D11_BE403761Ta22P002D06P022E111F1_089.ab1   (66)   678   363 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  156 nodes

 80 str. conn. components

Path
    1  C UCW048_D11_BE403761Ta22P002D06P022E111F1_089.ab1   744 
  102    UCW047_D11_BE403761Ta22P002D06P022E111R1_089.ab1    36 
  118  C UCW048_D11_BE403761Ta22P002D06P022E111F1_089.ab1   627 
  122    UCW047_D11_BE403761Ta22P002D06P022E111R1_089.ab1    56 
  126  C UCW048_D11_BE403761Ta22P002D06P022E111F1_089.ab1   619 
  130    UCW047_D11_BE403761Ta22P002D06P022E111R1_089.ab1    64 
  134  C UCW048_D11_BE403761Ta22P002D06P022E111F1_089.ab1   611 
  146    UCW047_D11_BE403761Ta22P002D06P022E111R1_089.ab1    80 
  162  C UCW048_D11_BE403761Ta22P002D06P022E111F1_089.ab1   583 
Contig length: old 744, new 744

Contig length: old 744, new 744
New start: 0