No. words: 3425; after pruning: 3359


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.6 (1,1:12)  825  0.35 0.00 0.00  UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1       13   863 (62)    UCW030R_H05_BE404490At01P014E05P014E111R1_033.ab1        1   851 (0) *
Merge:(0)    0    0.0 18.3 (2,1:885)  814  0.59 0.00 0.12  UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1       35   887 (38)  C UCW030F_H05_BE404490At01P014E05P014E111F1_033.ab1   (0)   852     1 *
Merge:(0)    0    0.0 17.1 (3,1:888)  758  0.63 0.00 0.13  UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1       93   890 (35)  C UCW017F_G10_BE404490At01P014E05P014E111F1_068.ab1   (0)   797     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  2372 nodes

 613 str. conn. components

Path
    1    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1     1 
   24    UCW030R_H05_BE404490At01P014E05P014E111R1_033.ab1    12 
   28    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1    28 
   36    UCW030R_H05_BE404490At01P014E05P014E111R1_033.ab1    24 
   44    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1    44 
   76    UCW030R_H05_BE404490At01P014E05P014E111R1_033.ab1    64 
   82    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1    82 
   84    UCW030R_H05_BE404490At01P014E05P014E111R1_033.ab1    72 
   88    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1    88 
   90    UCW030R_H05_BE404490At01P014E05P014E111R1_033.ab1    78 
  110    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1   110 
  126    UCW030R_H05_BE404490At01P014E05P014E111R1_033.ab1   114 
  164    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1   164 
  558  C UCW030F_H05_BE404490At01P014E05P014E111F1_033.ab1   329 
  565  C UCW017F_G10_BE404490At01P014E05P014E111F1_068.ab1   325 
  589  C UCW030F_H05_BE404490At01P014E05P014E111F1_033.ab1   298 
  681  C UCW017F_G10_BE404490At01P014E05P014E111F1_068.ab1   209 
  875    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1   875 
  881  C UCW030F_H05_BE404490At01P014E05P014E111F1_033.ab1     7 
  883  C UCW017F_G10_BE404490At01P014E05P014E111F1_068.ab1     8 
  887    UCW017R_G10_BE404490At01P014E05P014E111R1_068.ab1   887 
Contig length: old 925, new 925

Contig length: old 925, new 925
New start: 0