No. words: 1462; after pruning: 1436


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:918)  528  0.18 0.00 0.00  UCW002F_D04_BE404490At02P002A06A121F1_030.ab1      211   753 (0)  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   (0)   709   167 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1     1 
  409  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   511 
  413    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   413 
  493  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   427 
  497    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   497 
  501  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   419 
  509    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   509 
  521  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   399 
  533    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   533 
  541  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   379 
  545    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   545 
  549  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   371 
  553    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   553 
  557  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   363 
  561    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   561 
  573  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   347 
  577    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   577 
  581  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   339 
  585    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   585 
  597  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   323 
  609    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   609 
  617  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   303 
  637    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   637 
  641  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   279 
  713    UCW002F_D04_BE404490At02P002A06A121F1_030.ab1   713 
  717  C UCW002R_D04_BE404490At02P002A06A121R1_030.ab1   203 
Contig length: old 919, new 919

Contig length: old 919, new 919
New start: 0