No. words: 1606; after pruning: 1566


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:925)  638  1.03 0.00 0.29  UCW002F_D03_BE404490Ld04P002A06A121F1_026.ab1      102   782 (0)  C UCW002R_D03_BE404490Ld04P002A06A121R1_026.ab1   (0)   824   146 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1    UCW002F_D03_BE404490Ld04P002A06A121F1_026.ab1     1 
  481  C UCW002R_D03_BE404490Ld04P002A06A121R1_026.ab1   447 
  485    UCW002F_D03_BE404490Ld04P002A06A121F1_026.ab1   485 
  493  C UCW002R_D03_BE404490Ld04P002A06A121R1_026.ab1   435 
  497    UCW002F_D03_BE404490Ld04P002A06A121F1_026.ab1   497 
  501  C UCW002R_D03_BE404490Ld04P002A06A121R1_026.ab1   427 
  517    UCW002F_D03_BE404490Ld04P002A06A121F1_026.ab1   517 
  529  C UCW002R_D03_BE404490Ld04P002A06A121R1_026.ab1   399 
  594    UCW002F_D03_BE404490Ld04P002A06A121F1_026.ab1   594 
  598  C UCW002R_D03_BE404490Ld04P002A06A121R1_026.ab1   330 
  650    UCW002F_D03_BE404490Ld04P002A06A121F1_026.ab1   650 
  654  C UCW002R_D03_BE404490Ld04P002A06A121R1_026.ab1   274 
Contig length: old 926, new 927

Contig length: old 927, new 927
New start: 0