No. words: 1535; after pruning: 1495


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.0 (1,1:924)  584  0.66 0.00 0.16  UCW002F_E03_BE404490Ld05P002A06A121F1_019.ab1      148   757 (0)  C UCW002R_E03_BE404490Ld05P002A06A121R1_019.ab1   (0)   778   170 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1    UCW002F_E03_BE404490Ld05P002A06A121F1_019.ab1     1 
  431  C UCW002R_E03_BE404490Ld05P002A06A121R1_019.ab1   495 
  435    UCW002F_E03_BE404490Ld05P002A06A121F1_019.ab1   435 
  491  C UCW002R_E03_BE404490Ld05P002A06A121R1_019.ab1   435 
  495    UCW002F_E03_BE404490Ld05P002A06A121F1_019.ab1   495 
  515  C UCW002R_E03_BE404490Ld05P002A06A121R1_019.ab1   411 
  519    UCW002F_E03_BE404490Ld05P002A06A121F1_019.ab1   519 
  523  C UCW002R_E03_BE404490Ld05P002A06A121R1_019.ab1   403 
  576    UCW002F_E03_BE404490Ld05P002A06A121F1_019.ab1   577 
  580  C UCW002R_E03_BE404490Ld05P002A06A121R1_019.ab1   346 
Contig length: old 925, new 925

Contig length: old 925, new 925
New start: 0