No. words: 1542; after pruning: 1516


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:920)  559  2.42 0.00 0.16  UCW002F_G03_BE404490Ld07P002A06A121F1_020.ab1      158   778 (0)  C UCW002R_G03_BE404490Ld07P002A06A121R1_020.ab1   (0)   764   145 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  270 nodes

 137 str. conn. components

Path
    1    UCW002F_G03_BE404490Ld07P002A06A121F1_020.ab1     1 
  499  C UCW002R_G03_BE404490Ld07P002A06A121R1_020.ab1   423 
  503    UCW002F_G03_BE404490Ld07P002A06A121F1_020.ab1   503 
  507  C UCW002R_G03_BE404490Ld07P002A06A121R1_020.ab1   415 
  515    UCW002F_G03_BE404490Ld07P002A06A121F1_020.ab1   515 
  523  C UCW002R_G03_BE404490Ld07P002A06A121R1_020.ab1   399 
  527    UCW002F_G03_BE404490Ld07P002A06A121F1_020.ab1   527 
  535  C UCW002R_G03_BE404490Ld07P002A06A121R1_020.ab1   387 
  539    UCW002F_G03_BE404490Ld07P002A06A121F1_020.ab1   539 
  543  C UCW002R_G03_BE404490Ld07P002A06A121R1_020.ab1   379 
Contig length: old 921, new 921

Contig length: old 921, new 921
New start: 0 
S Change at: 597; seg lengths: entry 1, contig 1
S Change at: 651; seg lengths: entry 1, contig 1