No. words: 1165; after pruning: 1139


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.8 (1,1:523)  505  0.00 0.19 0.00  UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1        2   524 (59)  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   (58)   524     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   582 
   77    UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1    19 
   85  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   498 
   93    UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1    35 
  109  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   474 
  113    UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1    55 
  137  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   446 
  149    UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1    91 
  157  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   426 
  389    UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1   331 
  397  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   186 
  441    UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1   383 
  445  C UCW060_C02_BE406609Ta11P033A03P013F011F1_012.ab1   138 
  489    UCW059_C02_BE406609Ta11P033A03P013F011R1_012.ab1   431 
Contig length: old 641, new 641

Contig length: old 641, new 641
New start: 0