No. words: 1409; after pruning: 1383


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:656)  633  0.00 0.00 0.30  UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1        1   658 (32)  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   (63)   656     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   719 
   87    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1    24 
   95  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   625 
   99    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1    36 
  103  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   617 
  107    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1    44 
  123  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   597 
  131    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1    68 
  143  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   577 
  155    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1    92 
  167  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   553 
  199    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   136 
  231  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   489 
  251    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   188 
  327  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   393 
  351    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   288 
  371  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   349 
  419    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   356 
  423  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   297 
  435    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   372 
  439  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   281 
  463    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   400 
  503  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1   217 
  579    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   516 
  651  C UCW060_C08_BE426080Ta11P033D03P002B061F1_060.ab1    69 
  659    UCW059_C08_BE426080Ta11P033D03P002B061R1_060.ab1   596 
Contig length: old 752, new 753

Contig length: old 753, new 753
New start: 0