No. words: 1179; after pruning: 1153


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   13    0.0 10.2 (1,1:553)  510  0.37 0.37 0.00  UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1        6   540 (60)  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   (29)   550    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
13       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   579 
   40    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1    15 
   64  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   515 
   76    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1    51 
  304  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   275 
  308    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   283 
  316  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   263 
  320    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   295 
  328  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   251 
  360    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   335 
  364  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   215 
  388    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   363 
  396  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   183 
  408    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   383 
  428  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   151 
  432    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   407 
  460  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1   119 
  472    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   447 
  512  C UCW060_E05_BE426080Ta13P033C03P002B061F1_039.ab1    67 
  520    UCW059_E05_BE426080Ta13P033C03P002B061R1_039.ab1   495 
Contig length: old 625, new 625

Contig length: old 625, new 626
New start: 0 
I Change at: 50; seg lengths: entry 1, contig 0