No. words: 1195; after pruning: 1169


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   13    0.0 10.6 (1,1:540)  513  0.00 0.19 0.00  UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1        1   528 (63)  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   (62)   542    14 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
13       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   604 
  114    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1    51 
  130  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   475 
  146    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1    83 
  154  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   451 
  166    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   103 
  190  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   415 
  194    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   131 
  198  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   407 
  210    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   147 
  214  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   391 
  218    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   155 
  266  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   339 
  274    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   211 
  278  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   327 
  294    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   231 
  302  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   303 
  310    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   247 
  314  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   291 
  402    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   339 
  454  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1   151 
  490    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   427 
  534  C UCW060_H05_BE426080Ta16P033C03P002B061F1_033.ab1    71 
  546    UCW059_H05_BE426080Ta16P033C03P002B061R1_033.ab1   483 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0