No. words: 1173; after pruning: 1147


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:545)  515  0.00 0.00 0.91  UCW059_C06_BE426080Ta19P033C03P002B061R1_044.ab1        1   550 (26)  C UCW060_C06_BE426080Ta19P033C03P002B061F1_044.ab1   (52)   545     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C UCW060_C06_BE426080Ta19P033C03P002B061F1_044.ab1   597 
  280    UCW059_C06_BE426080Ta19P033C03P002B061R1_044.ab1   228 
  292  C UCW060_C06_BE426080Ta19P033C03P002B061F1_044.ab1   306 
  364    UCW059_C06_BE426080Ta19P033C03P002B061R1_044.ab1   312 
  372  C UCW060_C06_BE426080Ta19P033C03P002B061F1_044.ab1   226 
  392    UCW059_C06_BE426080Ta19P033C03P002B061R1_044.ab1   340 
Contig length: old 627, new 628

Contig length: old 628, new 628
New start: 0