No. words: 1232; after pruning: 1164


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.4 (1,1:657)  537  0.54 0.36 0.00  UCW008F_H01_BE443187Ld08P013F02F081F1_001.ab1        2   557 (0)  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   (17)   658   101 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   675 
   21    UCW008F_H01_BE443187Ld08P013F02F081F1_001.ab1     5 
   29  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   647 
   47    UCW008F_H01_BE443187Ld08P013F02F081F1_001.ab1    29 
  154  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   522 
  158    UCW008F_H01_BE443187Ld08P013F02F081F1_001.ab1   140 
  182  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   494 
  186    UCW008F_H01_BE443187Ld08P013F02F081F1_001.ab1   168 
  206  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   470 
  210    UCW008F_H01_BE443187Ld08P013F02F081F1_001.ab1   192 
  218  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   458 
  222    UCW008F_H01_BE443187Ld08P013F02F081F1_001.ab1   204 
  234  C UCW008R_H01_BE443187Ld08P013F02F081R1_001.ab1   442 
Contig length: old 675, new 675

Contig length: old 675, new 675
New start: 0