No. words: 1355; after pruning: 1329


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.6 (1,1:632)  610  0.00 0.00 0.32  UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1        4   634 (39)  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   (53)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   682 
   97    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1    47 
  149  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   534 
  153    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1   103 
  165  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   518 
  185    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1   135 
  205  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   478 
  209    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1   159 
  213  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   470 
  229    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1   179 
  353  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   330 
  405    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1   355 
  425  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1   258 
  457    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1   407 
  645  C UCW064_D08_BE443187Ta12P033A06P013F081R1_058.ab1    38 
  653    UCW063_D08_BE443187Ta12P033A06P013F081F1_058.ab1   603 
Contig length: old 722, new 723

Contig length: old 723, new 723
New start: 0