No. words: 1338; after pruning: 1312


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:627)  614  0.00 0.16 0.00  UCW063_A09_BE443187Ta17P033A06P013F081F1_079.ab1        1   628 (44)  C UCW064_A09_BE443187Ta17P033A06P013F081R1_079.ab1   (37)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C UCW064_A09_BE443187Ta17P033A06P013F081R1_079.ab1   666 
   83    UCW063_A09_BE443187Ta17P033A06P013F081F1_079.ab1    45 
   91  C UCW064_A09_BE443187Ta17P033A06P013F081R1_079.ab1   576 
   95    UCW063_A09_BE443187Ta17P033A06P013F081F1_079.ab1    57 
  103  C UCW064_A09_BE443187Ta17P033A06P013F081R1_079.ab1   564 
  107    UCW063_A09_BE443187Ta17P033A06P013F081F1_079.ab1    69 
  195  C UCW064_A09_BE443187Ta17P033A06P013F081R1_079.ab1   472 
  207    UCW063_A09_BE443187Ta17P033A06P013F081F1_079.ab1   169 
Contig length: old 710, new 710

Contig length: old 710, new 710
New start: 0