No. words: 1133; after pruning: 1107


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   14    0.0 7.5 (1,1:515)  475  0.00 0.20 0.00  UCW039a_F05_BE444644Ta14P001E10P022G071F1_037.ab1        4   502 (70)  C UCW040a_F05_BE444644Ta14P001E10P022G071R1_037.ab1   (47)   514    15 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
14       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCW040a_F05_BE444644Ta14P001E10P022G071R1_037.ab1   561 
   96    UCW039a_F05_BE444644Ta14P001E10P022G071F1_037.ab1    51 
  112  C UCW040a_F05_BE444644Ta14P001E10P022G071R1_037.ab1   450 
  140    UCW039a_F05_BE444644Ta14P001E10P022G071F1_037.ab1    95 
  144  C UCW040a_F05_BE444644Ta14P001E10P022G071R1_037.ab1   418 
  260    UCW039a_F05_BE444644Ta14P001E10P022G071F1_037.ab1   215 
  284  C UCW040a_F05_BE444644Ta14P001E10P022G071R1_037.ab1   278 
  496    UCW039a_F05_BE444644Ta14P001E10P022G071F1_037.ab1   451 
  504  C UCW040a_F05_BE444644Ta14P001E10P022G071R1_037.ab1    58 
  544    UCW039a_F05_BE444644Ta14P001E10P022G071F1_037.ab1   499 
Contig length: old 617, new 617

Contig length: old 617, new 617
New start: 0