No. words: 1724; after pruning: 1684


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:1313)  393  1.22 0.00 0.00  UCW007F_A05_BE490237Ld01P002H06H121F1_047.ab1      469   878 (0)  C UCW007R_A05_BE490237Ld01P002H06H121R1_047.ab1   (0)   846   437 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1    UCW007F_A05_BE490237Ld01P002H06H121F1_047.ab1     1 
  642  C UCW007R_A05_BE490237Ld01P002H06H121R1_047.ab1   673 
  650    UCW007F_A05_BE490237Ld01P002H06H121F1_047.ab1   650 
  662  C UCW007R_A05_BE490237Ld01P002H06H121R1_047.ab1   653 
Contig length: old 1314, new 1314

Contig length: old 1314, new 1314
New start: 0