No. words: 1840; after pruning: 1800


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 17.8 (1,1:897)  869  0.22 0.00 0.00  UCW007F_E10_BE494426As01P013H01H071F1_072.ab1        5   897 (14)  C UCW007R_E10_BE494426As01P013H01H071R1_072.ab1   (35)   894     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  444 nodes

 224 str. conn. components

Path
    1  C UCW007R_E10_BE494426As01P013H01H071R1_072.ab1   929 
   39    UCW007F_E10_BE494426As01P013H01H071F1_072.ab1     8 
  554  C UCW007R_E10_BE494426As01P013H01H071R1_072.ab1   376 
  570    UCW007F_E10_BE494426As01P013H01H071F1_072.ab1   539 
  578  C UCW007R_E10_BE494426As01P013H01H071R1_072.ab1   352 
  922    UCW007F_E10_BE494426As01P013H01H071F1_072.ab1   891 
Contig length: old 942, new 942

Contig length: old 942, new 942
New start: 0