No. words: 1857; after pruning: 1831


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.3 (1,1:909)  872  0.00 0.22 0.22  UCW007F_C09_BE494426Ld03P013H01H071F1_075.ab1        1   910 (12)  C UCW007R_C09_BE494426Ld03P013H01H071R1_075.ab1   (25)   910     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  446 nodes

 225 str. conn. components

Path
    1  C UCW007R_C09_BE494426Ld03P013H01H071R1_075.ab1   935 
   42    UCW007F_C09_BE494426Ld03P013H01H071F1_075.ab1    15 
  553  C UCW007R_C09_BE494426Ld03P013H01H071R1_075.ab1   384 
  932    UCW007F_C09_BE494426Ld03P013H01H071F1_075.ab1   906 
Contig length: old 947, new 948

Contig length: old 948, new 949
New start: 0 
I Change at: 930; seg lengths: entry 1, contig 0