No. words: 1681; after pruning: 1655


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:1180)  495  0.00 0.00 0.00  UCW007F_F11_BE495277Ld06P013A02A081F1_085.ab1      330   829 (0)  C UCW007R_F11_BE495277Ld06P013A02A081R1_085.ab1   (0)   852   353 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    UCW007F_F11_BE495277Ld06P013A02A081F1_085.ab1     1 
  477  C UCW007R_F11_BE495277Ld06P013A02A081R1_085.ab1   705 
  489    UCW007F_F11_BE495277Ld06P013A02A081F1_085.ab1   489 
  549  C UCW007R_F11_BE495277Ld06P013A02A081R1_085.ab1   633 
  581    UCW007F_F11_BE495277Ld06P013A02A081F1_085.ab1   581 
  585  C UCW007R_F11_BE495277Ld06P013A02A081R1_085.ab1   597 
Contig length: old 1181, new 1181

Contig length: old 1181, new 1181
New start: 0