No. words: 1140; after pruning: 1114


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 9.9 (1,1:514)  493  0.20 0.00 0.00  UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1        4   515 (59)  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1   (54)   512     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1   566 
  110    UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1    59 
  114  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1   453 
  382    UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1   331 
  386  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1   181 
  454    UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1   403 
  462  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1   105 
  470    UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1   419 
  482  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1    85 
  526    UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1   475 
  534  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1    33 
  538    UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1   487 
  554  C UCW048_H06_BE497368Sn24P002H09P022F111R1_034.ab1    13 
  562    UCW047_H06_BE497368Sn24P002H09P022F111F1_034.ab1   511 
Contig length: old 625, new 625

Contig length: old 625, new 625
New start: 0