No. words: 666; after pruning: 640


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 0.6 (1,1:544)   99  3.42 0.00 0.00  UCW049_G11_BE497368Sn25P002G09P022G111F1_083.ab1       28   144 (0)  C UCW050_G11_BE497368Sn25P002G09P022G111R1_083.ab1   (4)   518   402 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    UCW049_G11_BE497368Sn25P002G09P022G111F1_083.ab1     1 
   89  C UCW050_G11_BE497368Sn25P002G09P022G111R1_083.ab1   457 
  109    UCW049_G11_BE497368Sn25P002G09P022G111F1_083.ab1   109 
  122  C UCW050_G11_BE497368Sn25P002G09P022G111R1_083.ab1   424 
Contig length: old 545, new 545

Contig length: old 545, new 545
New start: 0