No. words: 1169; after pruning: 1143


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 7.1 (1,1:551)  511  0.00 0.18 0.18  UCW049_B12_BE497368Sn27P002G09P022G111F1_094.ab1        5   546 (35)  C UCW050_B12_BE497368Sn27P002G09P022G111R1_094.ab1   (40)   548     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C UCW050_B12_BE497368Sn27P002G09P022G111R1_094.ab1   588 
  363    UCW049_B12_BE497368Sn27P002G09P022G111F1_094.ab1   326 
  383  C UCW050_B12_BE497368Sn27P002G09P022G111R1_094.ab1   206 
  391    UCW049_B12_BE497368Sn27P002G09P022G111F1_094.ab1   354 
  399  C UCW050_B12_BE497368Sn27P002G09P022G111R1_094.ab1   190 
  455    UCW049_B12_BE497368Sn27P002G09P022G111F1_094.ab1   418 
  487  C UCW050_B12_BE497368Sn27P002G09P022G111R1_094.ab1   102 
  495    UCW049_B12_BE497368Sn27P002G09P022G111F1_094.ab1   458 
  503  C UCW050_B12_BE497368Sn27P002G09P022G111R1_094.ab1    86 
  523    UCW049_B12_BE497368Sn27P002G09P022G111F1_094.ab1   486 
Contig length: old 617, new 618

Contig length: old 618, new 618
New start: 0