No. words: 1137; after pruning: 1111


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.8 (1,1:513)  486  0.00 0.20 0.20  UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1        4   514 (60)  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   (52)   511     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   563 
  103    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1    53 
  107  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   457 
  195    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   145 
  199  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   365 
  395    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   345 
  399  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   165 
  419    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   369 
  423  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   141 
  427    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   377 
  431  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   133 
  451    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   401 
  459  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1   105 
  467    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   417 
  491  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1    73 
  495    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   445 
  515  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1    49 
  519    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   469 
  531  C UCW048_F05_BE497368Ta14P002H09P022F111R1_037.ab1    33 
  535    UCW047_F05_BE497368Ta14P002H09P022F111F1_037.ab1   485 
Contig length: old 623, new 624

Contig length: old 624, new 624
New start: 0