No. words: 1066; after pruning: 1040


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:498)  466  0.80 0.20 0.00  UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1        2   499 (46)  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   (22)   499     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   521 
   41    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1    19 
   53  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   469 
   76    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1    54 
  104  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   418 
  120    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1    98 
  224  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   298 
  232    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   210 
  236  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   286 
  248    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   226 
  252  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   270 
  280    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   258 
  312  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   210 
  356    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   334 
  364  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   158 
  368    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   346 
  376  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1   146 
  408    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   386 
  424  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1    98 
  472    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   450 
  476  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1    46 
  492    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   470 
  496  C UCW054_B08_BE497368Td10P002H09P022G111R1_062.ab1    26 
  516    UCW053_B08_BE497368Td10P002H09P022G111F1_062.ab1   494 
Contig length: old 567, new 567

Contig length: old 567, new 567
New start: 0