No. words: 1467; after pruning: 1427


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:728)  690  0.14 0.14 0.14  UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1        6   730 (12)  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   (0)   725     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  354 nodes

 179 str. conn. components

Path
    1    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1     1 
    9  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   722 
   40    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1    39 
   48  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   683 
   52    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1    51 
   84  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   647 
   88    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1    87 
   92  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   639 
   96    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1    95 
  136  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   595 
  140    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   139 
  144  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   587 
  148    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   147 
  248  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   483 
  264    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   263 
  280  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   451 
  300    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   299 
  328  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   403 
  332    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   331 
  348  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   383 
  356    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   355 
  360  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   371 
  364    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   363 
  380  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   351 
  388    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   387 
  392  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   339 
  408    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   407 
  412  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   319 
  448    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   447 
  460  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   271 
  480    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   479 
  484  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   247 
  576    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   575 
  580  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   151 
  588    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   587 
  592  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   139 
  612    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   611 
  620  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1   111 
  644    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   643 
  648  C UCW005R_D06_BE497368Tu02P002H03H091R1_046.ab1    83 
  716    UCW005F_D06_BE497368Tu02P002H03H091F1_046.ab1   715 
Contig length: old 742, new 743

Contig length: old 743, new 743
New start: 0