No. words: 1638; after pruning: 1598


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:881)  734  0.40 0.00 0.00  UCW006F_C05_BE497820Ld03P002F03F091F1_034.ab1       23   778 (0)  C UCW006R_C05_BE497820Ld03P002F03F091R1_034.ab1   (0)   860   105 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1    UCW006F_C05_BE497820Ld03P002F03F091F1_034.ab1     1 
  415  C UCW006R_C05_BE497820Ld03P002F03F091R1_034.ab1   468 
  419    UCW006F_C05_BE497820Ld03P002F03F091F1_034.ab1   419 
  431  C UCW006R_C05_BE497820Ld03P002F03F091R1_034.ab1   452 
  439    UCW006F_C05_BE497820Ld03P002F03F091F1_034.ab1   439 
  447  C UCW006R_C05_BE497820Ld03P002F03F091R1_034.ab1   436 
  451    UCW006F_C05_BE497820Ld03P002F03F091F1_034.ab1   451 
  487  C UCW006R_C05_BE497820Ld03P002F03F091R1_034.ab1   396 
  503    UCW006F_C05_BE497820Ld03P002F03F091F1_034.ab1   503 
  511  C UCW006R_C05_BE497820Ld03P002F03F091R1_034.ab1   372 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0