No. words: 1335; after pruning: 1309


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.3 (1,1:802)  497  0.00 0.00 0.00  UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1      294   803 (22)  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1   (0)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  256 nodes

 130 str. conn. components

Path
    1    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1     1 
  457  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1   347 
  473    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   473 
  481  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1   323 
  485    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   485 
  489  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1   315 
  501    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   501 
  509  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1   295 
  577    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   577 
  589  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1   215 
  685    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   685 
  689  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1   115 
  729    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   729 
  733  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1    71 
  773    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   773 
  777  C UCW056_H10_BE497820Ta18P033E01P002F031F1_066.ab1    27 
  797    UCW055_H10_BE497820Ta18P033E01P002F031R1_066.ab1   797 
Contig length: old 825, new 825

Contig length: old 825, new 825
New start: 0