No. words: 1733; after pruning: 1707


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.1 (1,1:838)  821  0.00 0.00 0.12  UCW055_D11_BE497820Ta22P033E01P002F031R1_089.ab1        1   838 (23)  C UCW056_D11_BE497820Ta22P033E01P002F031F1_089.ab1   (34)   838     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  418 nodes

 211 str. conn. components

Path
    1  C UCW056_D11_BE497820Ta22P033E01P002F031F1_089.ab1   872 
   50    UCW055_D11_BE497820Ta22P033E01P002F031R1_089.ab1    16 
  210  C UCW056_D11_BE497820Ta22P033E01P002F031F1_089.ab1   663 
  214    UCW055_D11_BE497820Ta22P033E01P002F031R1_089.ab1   180 
  250  C UCW056_D11_BE497820Ta22P033E01P002F031F1_089.ab1   623 
  294    UCW055_D11_BE497820Ta22P033E01P002F031R1_089.ab1   260 
  302  C UCW056_D11_BE497820Ta22P033E01P002F031F1_089.ab1   571 
  846    UCW055_D11_BE497820Ta22P033E01P002F031R1_089.ab1   812 
  850  C UCW056_D11_BE497820Ta22P033E01P002F031F1_089.ab1    23 
  854    UCW055_D11_BE497820Ta22P033E01P002F031R1_089.ab1   820 
Contig length: old 894, new 895

Contig length: old 895, new 895
New start: 0