No. words: 1562; after pruning: 1508


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:824)  684  0.28 0.28 0.00  UCW018F_G11_BE498768Ld07P014A06P014A121F1_083.ab1        1   704 (0)  C UCW018R_G11_BE498768Ld07P014A06P014A121R1_083.ab1   (32)   826   121 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C UCW018R_G11_BE498768Ld07P014A06P014A121R1_083.ab1   858 
   53    UCW018F_G11_BE498768Ld07P014A06P014A121F1_083.ab1    19 
  531  C UCW018R_G11_BE498768Ld07P014A06P014A121R1_083.ab1   328 
Contig length: old 858, new 858

Contig length: old 858, new 858
New start: 0