No. words: 1562; after pruning: 1494


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.2 (1,1:1493)   55  0.00 1.47 1.47  UCW003F_E01_BE498878Ld05P002A04A101F1_003.ab1      677   744 (0)  C UCW003R_E01_BE498878Ld05P002A04A101R1_003.ab1   (0)   818   751 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  30 nodes

 17 str. conn. components

Path
    1    UCW003F_E01_BE498878Ld05P002A04A101F1_003.ab1     1 
  692  C UCW003R_E01_BE498878Ld05P002A04A101R1_003.ab1   803 
  696    UCW003F_E01_BE498878Ld05P002A04A101F1_003.ab1   696 
  700  C UCW003R_E01_BE498878Ld05P002A04A101R1_003.ab1   795 
  704    UCW003F_E01_BE498878Ld05P002A04A101F1_003.ab1   704 
  725  C UCW003R_E01_BE498878Ld05P002A04A101R1_003.ab1   770 
  733    UCW003F_E01_BE498878Ld05P002A04A101F1_003.ab1   733 
  737  C UCW003R_E01_BE498878Ld05P002A04A101R1_003.ab1   758 
Contig length: old 1494, new 1494

Contig length: old 1494, new 1494
New start: 0 
S Change at: 208; seg lengths: entry 1, contig 1
S Change at: 585; seg lengths: entry 1, contig 1
S Change at: 782; seg lengths: entry 1, contig 1