No. words: 1530; after pruning: 1504


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:1242)  267  1.74 0.00 0.00  UCW005F_E04_BE499599As02P002H02H081F1_023.ab1      442   728 (0)  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   (0)   802   516 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  132 nodes

 68 str. conn. components

Path
    1    UCW005F_E04_BE499599As02P002H02H081F1_023.ab1     1 
  562  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   682 
  566    UCW005F_E04_BE499599As02P002H02H081F1_023.ab1   566 
  574  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   670 
  578    UCW005F_E04_BE499599As02P002H02H081F1_023.ab1   578 
  594  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   650 
  606    UCW005F_E04_BE499599As02P002H02H081F1_023.ab1   606 
  610  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   634 
  618    UCW005F_E04_BE499599As02P002H02H081F1_023.ab1   618 
  626  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   618 
  634    UCW005F_E04_BE499599As02P002H02H081F1_023.ab1   634 
  638  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   606 
  658    UCW005F_E04_BE499599As02P002H02H081F1_023.ab1   658 
  662  C UCW005R_E04_BE499599As02P002H02H081R1_023.ab1   582 
Contig length: old 1243, new 1243

Contig length: old 1243, new 1243
New start: 0