No. words: 1659; after pruning: 1633


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:1276)  379  0.00 0.00 0.00  UCW005F_B03_BE499599Ld02P002H02H081F1_025.ab1      433   814 (0)  C UCW005R_B03_BE499599Ld02P002H02H081R1_025.ab1   (0)   845   464 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1    UCW005F_B03_BE499599Ld02P002H02H081F1_025.ab1     1 
  624  C UCW005R_B03_BE499599Ld02P002H02H081R1_025.ab1   654 
  632    UCW005F_B03_BE499599Ld02P002H02H081F1_025.ab1   632 
  648  C UCW005R_B03_BE499599Ld02P002H02H081R1_025.ab1   630 
  652    UCW005F_B03_BE499599Ld02P002H02H081F1_025.ab1   652 
  668  C UCW005R_B03_BE499599Ld02P002H02H081R1_025.ab1   610 
  720    UCW005F_B03_BE499599Ld02P002H02H081F1_025.ab1   720 
  724  C UCW005R_B03_BE499599Ld02P002H02H081R1_025.ab1   554 
Contig length: old 1277, new 1277

Contig length: old 1277, new 1277
New start: 0