No. words: 1523; after pruning: 1497


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:1285)  223  1.27 0.00 0.00  UCW005F_D03_BE499599Ld04P002H02H081F1_026.ab1      559   795 (0)  C UCW005R_D03_BE499599Ld04P002H02H081R1_026.ab1   (0)   728   492 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  106 nodes

 55 str. conn. components

Path
    1    UCW005F_D03_BE499599Ld04P002H02H081F1_026.ab1     1 
  692  C UCW005R_D03_BE499599Ld04P002H02H081R1_026.ab1   595 
  696    UCW005F_D03_BE499599Ld04P002H02H081F1_026.ab1   696 
  700  C UCW005R_D03_BE499599Ld04P002H02H081R1_026.ab1   587 
  704    UCW005F_D03_BE499599Ld04P002H02H081F1_026.ab1   704 
  708  C UCW005R_D03_BE499599Ld04P002H02H081R1_026.ab1   579 
  764    UCW005F_D03_BE499599Ld04P002H02H081F1_026.ab1   764 
  768  C UCW005R_D03_BE499599Ld04P002H02H081R1_026.ab1   519 
Contig length: old 1286, new 1286

Contig length: old 1286, new 1286
New start: 0