No. words: 1546; after pruning: 1520


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:1052)  487  0.00 0.00 0.00  UCW049_G05_BE499599Sn25P002H08P022C121F1_035.ab1      212   704 (0)  C UCW050_G05_BE499599Sn25P002H08P022C121R1_035.ab1   (0)   842   350 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  248 nodes

 126 str. conn. components

Path
    1    UCW049_G05_BE499599Sn25P002H08P022C121F1_035.ab1     1 
  496  C UCW050_G05_BE499599Sn25P002H08P022C121R1_035.ab1   558 
  500    UCW049_G05_BE499599Sn25P002H08P022C121F1_035.ab1   500 
  520  C UCW050_G05_BE499599Sn25P002H08P022C121R1_035.ab1   534 
  540    UCW049_G05_BE499599Sn25P002H08P022C121F1_035.ab1   540 
  564  C UCW050_G05_BE499599Sn25P002H08P022C121R1_035.ab1   490 
Contig length: old 1053, new 1053

Contig length: old 1053, new 1053
New start: 0