No. words: 1455; after pruning: 1429


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:991)  450  0.65 0.00 0.00  UCW047_E07_BE499599Td05P002H08P022A121F1_055.ab1      282   744 (0)  C UCW048_E07_BE499599Td05P002H08P022A121R1_055.ab1   (0)   711   249 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1    UCW047_E07_BE499599Td05P002H08P022A121F1_055.ab1     1 
  505  C UCW048_E07_BE499599Td05P002H08P022A121R1_055.ab1   488 
  509    UCW047_E07_BE499599Td05P002H08P022A121F1_055.ab1   509 
  513  C UCW048_E07_BE499599Td05P002H08P022A121R1_055.ab1   480 
  521    UCW047_E07_BE499599Td05P002H08P022A121F1_055.ab1   521 
  529  C UCW048_E07_BE499599Td05P002H08P022A121R1_055.ab1   464 
Contig length: old 992, new 992

Contig length: old 992, new 992
New start: 0