No. words: 1458; after pruning: 1432


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.9 (1,1:1234)  220  0.00 0.00 0.00  UCW005F_H03_BE499599Tu01P002H02H081F1_028.ab1      513   735 (0)  C UCW005R_H03_BE499599Tu01P002H02H081R1_028.ab1   (0)   723   501 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    UCW005F_H03_BE499599Tu01P002H02H081F1_028.ab1     1 
  516  C UCW005R_H03_BE499599Tu01P002H02H081R1_028.ab1   720 
  520    UCW005F_H03_BE499599Tu01P002H02H081F1_028.ab1   520 
  652  C UCW005R_H03_BE499599Tu01P002H02H081R1_028.ab1   584 
  660    UCW005F_H03_BE499599Tu01P002H02H081F1_028.ab1   660 
  668  C UCW005R_H03_BE499599Tu01P002H02H081R1_028.ab1   568 
  676    UCW005F_H03_BE499599Tu01P002H02H081F1_028.ab1   676 
  680  C UCW005R_H03_BE499599Tu01P002H02H081R1_028.ab1   556 
  688    UCW005F_H03_BE499599Tu01P002H02H081F1_028.ab1   688 
  696  C UCW005R_H03_BE499599Tu01P002H02H081R1_028.ab1   540 
Contig length: old 1235, new 1235

Contig length: old 1235, new 1235
New start: 0