No. words: 3581; after pruning: 3501


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:1110)  722  0.26 0.13 0.13  UCW030F_D12_BE636795At02P014C06P014C121F1_090.ab1      142   904 (0)  C UCW030R_D12_BE636795At02P014C06P014C121R1_090.ab1   (0)   970   208 *
Merge:(0)    0    0.0 9.9 (1,1:1259)  428  0.22 0.00 0.00  UCW018F_H06_BE636795At02P014C06P014C121F1_034.ab1      405   851 (0)  C UCW018R_H06_BE636795At02P014C06P014C121R1_034.ab1   (0)   856   410 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  370 nodes

 187 str. conn. components

Path
    1    UCW030F_D12_BE636795At02P014C06P014C121F1_090.ab1     1 
  616  C UCW030R_D12_BE636795At02P014C06P014C121R1_090.ab1   496 
Contig length: old 1111, new 1111

Contig 1:  222 nodes

 113 str. conn. components

Path
    1    UCW018F_H06_BE636795At02P014C06P014C121F1_034.ab1     1 
  613  C UCW018R_H06_BE636795At02P014C06P014C121R1_034.ab1   648 
Contig length: old 1260, new 1260

Contig length: old 1111, new 1111
New start: 0 

Contig length: old 1260, new 1260
New start: 0