No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.6 (1,1:782)  748  0.13 0.13 0.26  UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1        1   784 (36)  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   (38)   783     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   821 
   42    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1     4 
   46  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   776 
   60    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1    21 
   64  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   758 
   68    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1    29 
   72  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   750 
   76    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1    37 
   88  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   734 
   92    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1    53 
  140  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   682 
  144    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1   105 
  164  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   658 
  172    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1   133 
  180  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   642 
  192    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1   153 
  196  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   626 
  248    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1   209 
  256  C UCW052_C08_BF201102Ta11P001G05P022C071F1_060.ab1   566 
  818    UCW051_C08_BF201102Ta11P001G05P022C071R1_060.ab1   781 
Contig length: old 858, new 857

Contig length: old 857, new 857
New start: 0