No. words: 1571; after pruning: 1545


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:906)  625  0.45 0.15 0.00  UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1      145   807 (0)  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   (0)   764   101 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1    UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1     1 
  543  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   365 
  547    UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1   547 
  567  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   341 
  571    UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1   571 
  579  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   329 
  583    UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1   583 
  587  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   321 
  595    UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1   595 
  619  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   289 
  667    UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1   667 
  671  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   237 
  695    UCW039a_B10_BF201102Ta12P001G05P022E071R1_078.ab1   695 
  699  C UCW040a_B10_BF201102Ta12P001G05P022E071F1_078.ab1   209 
Contig length: old 907, new 907

Contig length: old 907, new 907
New start: 0