No. words: 1536; after pruning: 1510


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:777)  684  0.14 0.00 0.00  UCW051_C09_BF201102Ta19P001G05P022C071R1_075.ab1        1   709 (0)  C UCW052_C09_BF201102Ta19P001G05P022C071F1_075.ab1   (49)   778    70 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1  C UCW052_C09_BF201102Ta19P001G05P022C071F1_075.ab1   827 
   63    UCW051_C09_BF201102Ta19P001G05P022C071R1_075.ab1    14 
   71  C UCW052_C09_BF201102Ta19P001G05P022C071F1_075.ab1   757 
   75    UCW051_C09_BF201102Ta19P001G05P022C071R1_075.ab1    26 
   79  C UCW052_C09_BF201102Ta19P001G05P022C071F1_075.ab1   749 
   91    UCW051_C09_BF201102Ta19P001G05P022C071R1_075.ab1    42 
  143  C UCW052_C09_BF201102Ta19P001G05P022C071F1_075.ab1   685 
  147    UCW051_C09_BF201102Ta19P001G05P022C071R1_075.ab1    98 
  187  C UCW052_C09_BF201102Ta19P001G05P022C071F1_075.ab1   641 
  195    UCW051_C09_BF201102Ta19P001G05P022C071R1_075.ab1   146 
  203  C UCW052_C09_BF201102Ta19P001G05P022C071F1_075.ab1   625 
Contig length: old 827, new 827

Contig length: old 827, new 827
New start: 0