No. words: 1438; after pruning: 1412


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 13.8 (1,1:776)  626  0.61 0.00 0.00  UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1       25   683 (0)  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   (2)   753    95 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1     1 
   36  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   742 
   40    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1    40 
   77  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   701 
   81    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1    81 
  145  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   633 
  149    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1   149 
  165  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   613 
  177    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1   177 
  185  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   593 
  197    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1   197 
  209  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   569 
  229    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1   229 
  237  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   541 
  249    UCW051_D09_BF201102Ta20P001G05P022C071R1_073.ab1   249 
  253  C UCW052_D09_BF201102Ta20P001G05P022C071F1_073.ab1   525 
Contig length: old 777, new 777

Contig length: old 777, new 777
New start: 0