No. words: 1716; after pruning: 1690


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:1013)  681  0.00 0.00 0.00  UCW002F_A02_BF201102Tu01P002G05G111F1_005.ab1      188   889 (0)  C UCW002R_A02_BF201102Tu01P002G05G111R1_005.ab1   (0)   827   126 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1    UCW002F_A02_BF201102Tu01P002G05G111F1_005.ab1     1 
  539  C UCW002R_A02_BF201102Tu01P002G05G111R1_005.ab1   476 
  543    UCW002F_A02_BF201102Tu01P002G05G111F1_005.ab1   543 
  547  C UCW002R_A02_BF201102Tu01P002G05G111R1_005.ab1   468 
  559    UCW002F_A02_BF201102Tu01P002G05G111F1_005.ab1   559 
  563  C UCW002R_A02_BF201102Tu01P002G05G111R1_005.ab1   452 
Contig length: old 1014, new 1014

Contig length: old 1014, new 1014
New start: 0