No. words: 1624; after pruning: 1598


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:787)  770  0.00 0.00 0.00  UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1        1   788 (18)  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   (30)   788     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   818 
   34    UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1     4 
  434  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   385 
  442    UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1   412 
  446  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   373 
  454    UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1   424 
  486  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   333 
  490    UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1   460 
  494  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   325 
  582    UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1   552 
  586  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   233 
  594    UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1   564 
  602  C UCW005R_G01_BF201348Ld07P002E02E081R1_004.ab1   217 
  814    UCW005F_G01_BF201348Ld07P002E02E081F1_004.ab1   784 
Contig length: old 836, new 836

Contig length: old 836, new 836
New start: 0