No. words: 1318; after pruning: 1278


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:627)  626  0.16 0.00 0.00  UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1        1   628 (52)  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1   (10)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1   638 
   26    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1    16 
   34  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1   605 
   38    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1    28 
   54  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1   585 
   62    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1    52 
   94  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1   545 
  134    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1   124 
  274  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1   365 
  550    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1   540 
  562  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1    77 
  566    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1   556 
  570  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1    69 
  621    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1   611 
  625  C UCW018R_A08_BF473658Ld09P014E06P014E121R1_064.ab1    14 
  633    UCW018F_A08_BF473658Ld09P014E06P014E121F1_064.ab1   623 
Contig length: old 690, new 690

Contig length: old 690, new 690
New start: 0